- This new code works with Marc's new version of Phylometa, so please update: http://lajeunesse.myweb.usf.edu/publications.html
Some notes on tree formatting for Phylometa.
1. Trees cannot have node labels - remove them (e.g., tree$node.label < NULL).
2. Trees cannot have zero length branches. This may seem like a non-problem, but it might be for example if you have resolved polytomies and zero length branches are added to resolve the polytomy.
3. I think you cannot have a branch length on the root branch.